Large-scale recent expansion of European patrilineages shown by population resequencing

2015
Authors
Batini, Chiara
Hallast, Pille
Zadik, Daniel
Delser, Pierpaolo Maisano

Benazzo, Andrea
Ghirotto, Silvia
Arroyo-Pardo, Eduardo

Cavalleri, Gianpiero L.

de Knijff, Peter

Dupuy, Berit Myhre
Eriksen, Heidi A.
King, Turi E.

Lopez de Munain, Adolfo

Lopez-Parra, Ana M.
Loutradis, Aphrodite
Milašin, Jelena

Novelletto, Andrea

Pamjav, Horolma
Sajantila, Antti

Tolun, Aslihan

Winney, Bruce
Jobling, Mark A.

Article (Published version)
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Show full item recordAbstract
The proportion of Europeans descending from Neolithic farmers similar to 10 thousand years ago (KYA) or Palaeolithic hunter-gatherers has been much debated. The male-specific region of the Ychromosome (MSY) has been widely applied to this question, but unbiased estimates of diversity and time depth have been lacking. Here we show that European patrilineages underwent a recent continent-wide expansion. Resequencing of 3.7Mb of MSY DNA in 334 males, comprising 17 European and Middle Eastern populations, defines a phylogeny containing 5,996 single-nucleotide polymorphisms. Dating indicates that three major lineages (I1, R1a and R1b), accounting for 64% of our sample, have very recent coalescent times, ranging between 3.5 and 7.3 KYA. A continuous swathe of 13/17 populations share similar histories featuring a demographic expansion starting similar to 2.1-4.2 KYA. Our results are compatible with ancient MSY DNA data, and contrast with data on mitochondrial DNA, indicating a widespread male...-specific phenomenon that focuses interest on the social structure of Bronze Age Europe.
Source:
Nature Communications, 2015, 6Publisher:
- Nature Publishing Group, London
Funding / projects:
- Wellcome Trust Senior FellowshipWellcome Trust [087576]
- University of Leicester CMBSP PhD studentship
- Leverhulme TrustLeverhulme Trust [F/00 212/AM]
- Netherlands Genomics Initiative/Netherlands Organization for Scientific Research (NWO) within the framework of the Forensic Genomics Consortium NetherlandsNetherlands Organization for Scientific Research (NWO)
- ERC Advanced Grant, 'LanGeLin' project [295733]
- Genetic control and molecular mechanisms in malignant, inflammatory and developmental pathologies of the orofacial region (RS-175075)
- Finnish Foundations' Professor Pool (Paulo Foundation)
- grant MIUR-PRINMinistry of Education, Universities and Research (MIUR)
DOI: 10.1038/ncomms8152
ISSN: 2041-1723
PubMed: 25988751
WoS: 000355533700011
Scopus: 2-s2.0-84930221998
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Stomatološki fakultetTY - JOUR AU - Batini, Chiara AU - Hallast, Pille AU - Zadik, Daniel AU - Delser, Pierpaolo Maisano AU - Benazzo, Andrea AU - Ghirotto, Silvia AU - Arroyo-Pardo, Eduardo AU - Cavalleri, Gianpiero L. AU - de Knijff, Peter AU - Dupuy, Berit Myhre AU - Eriksen, Heidi A. AU - King, Turi E. AU - Lopez de Munain, Adolfo AU - Lopez-Parra, Ana M. AU - Loutradis, Aphrodite AU - Milašin, Jelena AU - Novelletto, Andrea AU - Pamjav, Horolma AU - Sajantila, Antti AU - Tolun, Aslihan AU - Winney, Bruce AU - Jobling, Mark A. PY - 2015 UR - https://smile.stomf.bg.ac.rs/handle/123456789/1987 AB - The proportion of Europeans descending from Neolithic farmers similar to 10 thousand years ago (KYA) or Palaeolithic hunter-gatherers has been much debated. The male-specific region of the Ychromosome (MSY) has been widely applied to this question, but unbiased estimates of diversity and time depth have been lacking. Here we show that European patrilineages underwent a recent continent-wide expansion. Resequencing of 3.7Mb of MSY DNA in 334 males, comprising 17 European and Middle Eastern populations, defines a phylogeny containing 5,996 single-nucleotide polymorphisms. Dating indicates that three major lineages (I1, R1a and R1b), accounting for 64% of our sample, have very recent coalescent times, ranging between 3.5 and 7.3 KYA. A continuous swathe of 13/17 populations share similar histories featuring a demographic expansion starting similar to 2.1-4.2 KYA. Our results are compatible with ancient MSY DNA data, and contrast with data on mitochondrial DNA, indicating a widespread male-specific phenomenon that focuses interest on the social structure of Bronze Age Europe. PB - Nature Publishing Group, London T2 - Nature Communications T1 - Large-scale recent expansion of European patrilineages shown by population resequencing VL - 6 DO - 10.1038/ncomms8152 ER -
@article{ author = "Batini, Chiara and Hallast, Pille and Zadik, Daniel and Delser, Pierpaolo Maisano and Benazzo, Andrea and Ghirotto, Silvia and Arroyo-Pardo, Eduardo and Cavalleri, Gianpiero L. and de Knijff, Peter and Dupuy, Berit Myhre and Eriksen, Heidi A. and King, Turi E. and Lopez de Munain, Adolfo and Lopez-Parra, Ana M. and Loutradis, Aphrodite and Milašin, Jelena and Novelletto, Andrea and Pamjav, Horolma and Sajantila, Antti and Tolun, Aslihan and Winney, Bruce and Jobling, Mark A.", year = "2015", abstract = "The proportion of Europeans descending from Neolithic farmers similar to 10 thousand years ago (KYA) or Palaeolithic hunter-gatherers has been much debated. The male-specific region of the Ychromosome (MSY) has been widely applied to this question, but unbiased estimates of diversity and time depth have been lacking. Here we show that European patrilineages underwent a recent continent-wide expansion. Resequencing of 3.7Mb of MSY DNA in 334 males, comprising 17 European and Middle Eastern populations, defines a phylogeny containing 5,996 single-nucleotide polymorphisms. Dating indicates that three major lineages (I1, R1a and R1b), accounting for 64% of our sample, have very recent coalescent times, ranging between 3.5 and 7.3 KYA. A continuous swathe of 13/17 populations share similar histories featuring a demographic expansion starting similar to 2.1-4.2 KYA. Our results are compatible with ancient MSY DNA data, and contrast with data on mitochondrial DNA, indicating a widespread male-specific phenomenon that focuses interest on the social structure of Bronze Age Europe.", publisher = "Nature Publishing Group, London", journal = "Nature Communications", title = "Large-scale recent expansion of European patrilineages shown by population resequencing", volume = "6", doi = "10.1038/ncomms8152" }
Batini, C., Hallast, P., Zadik, D., Delser, P. M., Benazzo, A., Ghirotto, S., Arroyo-Pardo, E., Cavalleri, G. L., de Knijff, P., Dupuy, B. M., Eriksen, H. A., King, T. E., Lopez de Munain, A., Lopez-Parra, A. M., Loutradis, A., Milašin, J., Novelletto, A., Pamjav, H., Sajantila, A., Tolun, A., Winney, B.,& Jobling, M. A.. (2015). Large-scale recent expansion of European patrilineages shown by population resequencing. in Nature Communications Nature Publishing Group, London., 6. https://doi.org/10.1038/ncomms8152
Batini C, Hallast P, Zadik D, Delser PM, Benazzo A, Ghirotto S, Arroyo-Pardo E, Cavalleri GL, de Knijff P, Dupuy BM, Eriksen HA, King TE, Lopez de Munain A, Lopez-Parra AM, Loutradis A, Milašin J, Novelletto A, Pamjav H, Sajantila A, Tolun A, Winney B, Jobling MA. Large-scale recent expansion of European patrilineages shown by population resequencing. in Nature Communications. 2015;6. doi:10.1038/ncomms8152 .
Batini, Chiara, Hallast, Pille, Zadik, Daniel, Delser, Pierpaolo Maisano, Benazzo, Andrea, Ghirotto, Silvia, Arroyo-Pardo, Eduardo, Cavalleri, Gianpiero L., de Knijff, Peter, Dupuy, Berit Myhre, Eriksen, Heidi A., King, Turi E., Lopez de Munain, Adolfo, Lopez-Parra, Ana M., Loutradis, Aphrodite, Milašin, Jelena, Novelletto, Andrea, Pamjav, Horolma, Sajantila, Antti, Tolun, Aslihan, Winney, Bruce, Jobling, Mark A., "Large-scale recent expansion of European patrilineages shown by population resequencing" in Nature Communications, 6 (2015), https://doi.org/10.1038/ncomms8152 . .